MmuEX0021161 @ mm9
Exon Skipping
Gene
ENSMUSG00000091455 | Gm6924
Description
otogelin-like [Source:MGI Symbol;Acc:MGI:3647600]
Coordinates
chr10:107258938-107290461:-
Coord C1 exon
chr10:107290323-107290461
Coord A exon
chr10:107264729-107264863
Coord C2 exon
chr10:107258938-107259087
Length
135 bp
Sequences
Splice sites
3' ss Seq
ATATTCTTGACCTATTTCAGAGT
3' ss Score
7.6
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
TGTTTGTCGGCGGGGGATGTTCAATTGCACATATTATCCATGTCCTGCAGTATGCACAGTATATGGGGACCGGCATTATCACTCCTTTGATGGATTGGAATATGACTATATCAGCGATTGCCAAGTGTTTTTGATAAAG
Seq A exon
AGTACAGACGATTCTGATATATCTGTGATTTCCCAAAACAAGAAATGCTTTGACAATGATATTGTTTGTTCTAAAAGTGTTTTGATATCAATTGGAGACACTGAAATATACCTCAATGATGCTCCTTACAAACAG
Seq C2 exon
AAGCGATCAGGGTTTTTCCTGGAAAGCAGACCTGAGTACCAGCTCTGGAAGGCTGGGTTCTACATAGTAATATACTTCCCGGAGGAAGATATCACCATTCTGTGGGATGAGAAGACAACCATCCACATCAAAGTCGGGCCACAGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091455-'24-25,'24-24,25-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(18.9=59.6)
A:
PF0009420=VWD=FE(29.7=100)
C2:
PF0009420=VWD=FE(33.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGGGATGTTCAATTGCACA
R:
TGGTTGTCTTCTCATCCCACAG
Band lengths:
250-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: