BtaEX6019891 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011336 | OTOGL
Description
otogelin-like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr5:9866854-9883460:+
Coord C1 exon
chr5:9866854-9866992
Coord A exon
chr5:9877972-9878106
Coord C2 exon
chr5:9883311-9883460
Length
135 bp
Sequences
Splice sites
3' ss Seq
TAATATTTTTGACATTTCAGAGT
3' ss Score
5.46
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
TGTTTGTCGACGAGGAATGTTCAATTGCACATATTATCCATGCCCAGCAGTATGCACAATATATGGGGACCGGCATTATCATTCTTTTGATGGACTGGAATATGATTATATCAGTGATTGCCAGGTATTTTTGATAAAG
Seq A exon
AGTACAGATGATTCAGATATATCTGTCATTGCCCAGAACAAGAAATGCTTTGACAACGATATTGTTTGTTCTAAAAGTGTTTTGATTTCGGTTGGGGCCACTGAAATTTACCTGAATGATTCTCCTTACAAACAG
Seq C2 exon
AAACGATCAGGTTTTTTTCTGGAAAATAAACCAACATATCAGCTGTGGAAGGCAGGGTACTACATGGTAGTATACTTTCCAGAGAAAGACATCACTATTCTTTGGGATAAAAAGACAACCATCCATATCAAAGTTGGACCATGGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011336-'26-27,'26-26,27-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(18.9=59.6)
A:
PF0009420=VWD=FE(29.7=100)
C2:
PF0009420=VWD=FE(33.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCCATGCCCAGCAGTATGC
R:
TCCACCATGGTCCAACTTTGA
Band lengths:
253-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]