GgaEX6037103 @ galGal4
Exon Skipping
Gene
ENSGALG00000006208 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr5:11425083-11426805:+
Coord C1 exon
chr5:11425083-11425221
Coord A exon
chr5:11425456-11425590
Coord C2 exon
chr5:11426659-11426805
Length
135 bp
Sequences
Splice sites
3' ss Seq
GCCTATTTTTTCCTCTGCAGAGT
3' ss Score
11.05
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
CATTTGCCAGCATGGATCTTTTCAATGCACCTTCCATCCGTGCCCATCCATGTGTACTGCATATGGGGATCGGCATTACAGGACATTCGATGGACTTACATATGACTTTGTTGGAACTTGTAAGGCTTATCTAGTTAAG
Seq A exon
AGTACTTCTTCAGCAAGTTTCTCAGTAGTTATACAGAATATTAACTGCTTTAATACTGGAATCATTTGCAGAAAAGACATTTTCATTAATGTTGGAAAATCTTCTCTAATATTTGATGATGAAACTGGGAATCCA
Seq C2 exon
AGCTCATCTAGTTACATGGACAAACTACAGAAAATACAGTTATGGAAAGCTGGGTTTTTCACTGTTGTTCACTTTCCTGATGAACACATCACTATTCTTTGGGATCAGAGAACAACAGTTCATGTACAGATGGGTCATCAGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006208-'28-29,'28-28,29-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(19.0=59.6)
A:
PF0009420=VWD=FE(29.9=100)
C2:
PF0009420=VWD=FE(32.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCATCCATGTGTACTGCAT
R:
CTGCCACTGATGACCCATCTG
Band lengths:
245-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]