HsaEX6006561 @ hg19
Exon Skipping
Gene
ENSG00000160255 | ITGB2
Description
integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) [Source:HGNC Symbol;Acc:6155]
Coordinates
chr21:46312832-46320390:-
Coord C1 exon
chr21:46320235-46320390
Coord A exon
chr21:46318982-46319077
Coord C2 exon
chr21:46312832-46314975
Length
96 bp
Sequences
Splice sites
3' ss Seq
GCAGGACCTCCTCTCTCCAGGAC
3' ss Score
6.77
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GAGGAAATCGGCTGGCGCAACGTCACGCGGCTGCTGGTGTTTGCCACTGATGACGGCTTCCATTTCGCGGGCGACGGGAAGCTGGGCGCCATCCTGACCCCCAACGACGGCCGCTGTCACCTGGAGGACAACTTGTACAAGAGGAGCAACGAATTC
Seq A exon
GACTACCCATCGGTGGGCCAGCTGGCGCACAAGCTGGCTGAAAACAACATCCAGCCCATCTTCGCGGTGACCAGTAGGATGGTGAAGACCTACGAG
Seq C2 exon
AAACTCACCGAGATCATCCCCAAGTCAGCCGTGGGGGAGCTGTCTGAGGACTCCAGCAATGTGGTCCAACTCATTAAGAATGCTTACAATGTGAGTCTCCCGCACCACTCAGCTGGGACCCATGGGGTGGCCAGCAATCTCCCCACTGCAGGTCAGCTCCTGCTGCAGGTCAGCAGGAGGGTGGTCTGGGAGGAAAGCCCCTGCCCCGTGGGCCAGCTGCAGCCTCCCGACCTGCCCTCAGGCCTCCAGGACACCCTGGCCCGGCACTTCCACGGGGAGCTCTGGGTCCTCTCTCGTTGATGTTGTGGGCGATGCTCCCTGAAACCTGAGCTCCGGACTCTTCATTCCAGACTCTTCTCTGCGGGTCTCTATGGAGAAGGGAGGTGGACAGCTCTGGTGGCAAACAGTGCAGCTGGGGCAGGAGGAGGCCACAGGAAACCCCCACAGTGGACTTGGGCCCTGGGAAGACACCCTGGGGGGTGGAATTCCTCTTGCTCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160255-'25-35,'25-33,26-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(12.3=100)
A:
PF0036213=Integrin_beta=FE(10.3=100)
C2:
PF0036213=Integrin_beta=FE(10.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTGATGACGGCTTCCATT
R:
GTTGGACCACATTGCTGGAGT
Band lengths:
183-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)