BtaEX6003874 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017060 | ITGB2
Description
Bos taurus integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) (ITGB2), mRNA. [Source:RefSeq mRNA;Acc:NM_175781]
Coordinates
chr1:145110626-145113627:-
Coord C1 exon
chr1:145113472-145113627
Coord A exon
chr1:145112428-145112523
Coord C2 exon
chr1:145110626-145110715
Length
96 bp
Sequences
Splice sites
3' ss Seq
ACTGGGGGTCTCCTCTCTAGGAC
3' ss Score
9.65
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GAGGAAATCGGCTGGCGCAATGTCACCAGGCTGCTGGTGTTCGCCACGGACGATGGGTTCCACTTTGCGGGCGATGGAAAGCTGGGTGCCATCCTCACCCCCAATGACGGCCGCTGCCACCTGGAAGACAACCTGTACAAAAGCAGCAACGAATTT
Seq A exon
GACTACCCATCGGTGGGCCAGCTGGCACACAAACTGGCAGAAAGCAACATCCAGCCCATCTTTGCAGTAACCAAGAAGATGGTGAAAACGTACGAG
Seq C2 exon
AAGCTGACAGAGATCATCCCCAAGTCTGCAGTCGGGGAGCTGTCTGAAGATTCCAGGAACGTGGTGGAGCTTATCAAGAATGCCTACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017060-'11-8,'11-7,13-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(12.3=100)
A:
PF0036213=Integrin_beta=FE(7.5=100)
C2:
PF0036213=Integrin_beta=FE(7.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGACGATGGGTTCCACTTTG
R:
TCCACCACGTTCCTGGAATCT
Band lengths:
178-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]