RnoEX6062255 @ rn6
Exon Skipping
Gene
ENSRNOG00000001224 | Itgb2
Description
integrin subunit beta 2 [Source:RGD Symbol;Acc:1305581]
Coordinates
chr20:11787246-11790813:-
Coord C1 exon
chr20:11790697-11790813
Coord A exon
chr20:11789774-11789869
Coord C2 exon
chr20:11787246-11787335
Length
96 bp
Sequences
Splice sites
3' ss Seq
GGTGTGTCCCCTCTCTCCAGGAC
3' ss Score
11.02
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
TTTGCCACAGACGACGGCTTCCACTTTGCCGGTGATGGGAAACTGGGTGCCATCCTGACCCCCAACGATGGCCGCTGCCACCTGGAGGATAACATGTACAAGAGGAGCAATGAGTTC
Seq A exon
GACTACCCGTCAGTGGGCCAGCTGGCCCACAAACTTTCCGAGAGCAACATCCAGCCCATCTTTGCAGTGACAAAGAAGATGGTGAAAACCTATGAG
Seq C2 exon
AAACTGACAGAGATTATCCCCAAGTCAGCGGTGGGCGAGCTGTCTGACGATTCCAGTAACGTAGTCCAGCTTATCAAGAAAGCCTACTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001224-'14-13,'14-12,16-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(9.1=100)
A:
PF0036213=Integrin_beta=FE(7.5=100)
C2:
PF0036213=Integrin_beta=FE(7.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGACGACGGCTTCCACTTT
R:
CTGGAATCGTCAGACAGCTCG
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]