GgaEX0010654 @ galGal3
Exon Skipping
Gene
ENSGALG00000007511 | F1NM67_CHICK
Description
NA
Coordinates
chr7:7146757-7147902:-
Coord C1 exon
chr7:7147747-7147902
Coord A exon
chr7:7147381-7147476
Coord C2 exon
chr7:7146757-7146897
Length
96 bp
Sequences
Splice sites
3' ss Seq
AGCTTGCTCTTCTCACACAGGAC
3' ss Score
7.81
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GACTTGATTGGCTGGCGCAATGTGACCCGATTGCTGGTGTATGCAACTGATGATGGCTTCCACTTCGCTGGTGATGGCAAGCTCGGGGGCATTTTGACCCCCAATGATGGCCAGTGCCACTTGGAGGACAACATGTACAAAAAGAGCAATGAGTTT
Seq A exon
GACTATCCTTCTGTTGGCCAGCTGGTCCAGAAACTTGCTGAAAACAACATTCAGCCCATTTTTGCTGTCACCAGCAAGATGGTGGATGTTTACAAA
Seq C2 exon
AACCTCTCTTCACGGATCATCCTGGACCACTCCACCCTGCCAGATGTCCTGGATGTCAAATATGACTCCATCTGCAATAACAACACAGGAGCCAAGAATGAAGCAAGAGGGCAATGCGACAATGTTAAGATCAATGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007511_MULTIEX1-2/10=1-4
Average complexity
C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(12.2=100)
A:
PF0036213=Integrin_beta=FE(7.4=100)
C2:
PF0036213=Integrin_beta=FE(11.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACTTGGAGGACAACATGT
R:
AACATTGTCGCATTGCCCTCT
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]