HsaEX6007383 @ hg38
Exon Skipping
Gene
ENSG00000105877 | DNAH11
Description
dynein axonemal heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr7:21789241-21807979:+
Coord C1 exon
chr7:21789241-21789342
Coord A exon
chr7:21801137-21801271
Coord C2 exon
chr7:21807879-21807979
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTAATTCAACTCTGATTCAGGAT
3' ss Score
6.98
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
Exon sequences
Seq C1 exon
GTCTACTGTGATGTGGAGCCAAAACGCCAAGCATTAGCCCAAGCAAACTTAGAACTGGCTGCAGCTACTGAAAAACTAGAGGCTATCAGGAAAAAGCTTGTG
Seq A exon
GATCTGGATCGAAATCTGAGCAGACTCACGGCTTCATTTGAAAAAGCAACAGCTGAGAAAGTCCGGTGTCAAGAAGAGGTGAACCAAACCAACAAAACCATCAAATTAGCTAACAGACTTGTCAAGGAACTTGAG
Seq C2 exon
TCAGAGAAGATTCGCTGGGGTCAATCCATTAAGTCCTTTGAAGCTCAAGAGAAGACACTCTGTGGAGATGTTCTTCTCACGGCGGCATTTGTGTCTTACGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877-'92-95,'92-94,93-95
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF127772=MT=FE(9.6=100),PF060097=Laminin_II=PU(22.4=55.9)
A:
PF127772=MT=FE(13.3=100),PF060097=Laminin_II=FE(54.1=100)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTACTGTGATGTGGAGCCA
R:
ACGTAAGACACAAATGCCGCC
Band lengths:
203-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains