BtaEX6026602 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30675779-30688520:+
Coord C1 exon
chr4:30675779-30675880
Coord A exon
chr4:30683647-30683781
Coord C2 exon
chr4:30688350-30688520
Length
135 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTTTTTCTTTAAAGGAT
3' ss Score
11.13
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GTCTACTGTGACGTGGAGCCCAAACGCCAAGCATTAGCCCAGGCAAACTTAGAACTGGCTGCAGCTGCTGAGAAATTGGGGGCTATCAGGAAAAAGCTAGCG
Seq A exon
GATTTGGATCGAAATCTGAGCAGACTCACAGATTCATTTGAAAAGGCCATAGCTGAGAAAGTTCGCTGTCAAGAAGAGGTGAACCAAACTAACAAAACTATTGAACTAGCCAACCGACTTGTGAGGGAGCTGGAG
Seq C2 exon
TCAGAGAAGATTCGCTGGGGCCAGTCTATTAAATCCTTCGAAGCGCAAGAGAAGACGCTCTGTGGAGATGTTCTCCTTACGGCAGCATACGTGTCTTATGTTGGATCCTTTACACAACAGTATCGCCAGGAACTGGTGGACTGCATGTGGGTTCCCTTTCTTCAAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078-'74-77,'74-76,75-77=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(9.6=100),PF060097=Laminin_II=PU(22.1=55.9)
A:
PF127772=MT=FE(12.8=100),PF060097=Laminin_II=FE(51.2=100)
C2:
PF127772=MT=PD(15.4=93.0),PF060097=Laminin_II=PD(23.3=35.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGTGACGTGGAGCCCAAA
R:
CATGCAGTCCACCAGTTCCTG
Band lengths:
246-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]