RnoEX0028423 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145858991-145872392:-
Coord C1 exon
chr6:145872291-145872392
Coord A exon
chr6:145865999-145866133
Coord C2 exon
chr6:145858991-145859161
Length
135 bp
Sequences
Splice sites
3' ss Seq
ATTTTGACTCCCTCTTTTAGGAT
3' ss Score
11.81
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
Exon sequences
Seq C1 exon
GTTTATTGTGACGTGGAGCCCAAACGTCAGGCATTGGCCCAAACAAACTTAGACCTGGCTGCAGCTACTGAAAAGTTAGAGGCCGTCAGGAGGAAGCTCGTG
Seq A exon
GATCTGGATCATAATCTGAGAAGACTTACAGCTTCATTTGAAAAGGCAACAGCTGAGAAGGTCCGGTGTCAGGAAGAAGTGAATCAAACCAATAAGACGATTGACTTGGCCAACAGACTAGTCAGTGAACTTGAG
Seq C2 exon
TCAGAGAAGATTCGATGGGGTCAGTCCATTAAGTCTTTTGAAACTCAAGAGAAGACACTGTGTGGAGATGTGCTGCTCACGGCAGCGTTTGTGTCTTACATTGGGTCCTTCACAAGACAGTATCGCCAGGAACTGGTGGACTGCAAGTGGATTCCATTTCTTCAGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-'78-78,'78-77,79-78
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(9.6=100),PF060097=Laminin_II=PU(21.8=55.9)
A:
PF127772=MT=FE(12.8=100),PF060097=Laminin_II=FE(50.6=100)
C2:
PF127772=MT=PD(15.4=93.0),PF060097=Laminin_II=PD(24.1=36.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTGACGTGGAGCCCAAAC
R:
CTTGCAGTCCACCAGTTCCTG
Band lengths:
245-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]