MmuEX0014955 @ mm10
Exon Skipping
Gene
ENSMUSG00000018581 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:117960985-117972416:-
Coord C1 exon
chr12:117972315-117972416
Coord A exon
chr12:117966532-117966666
Coord C2 exon
chr12:117960985-117961155
Length
135 bp
Sequences
Splice sites
3' ss Seq
ATTTTGACTCCTCCTTTTAGGAT
3' ss Score
11.11
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
Exon sequences
Seq C1 exon
GTTTATTGTGATGTGGAGCCCAAACGCCAGGCATTGGCCCAAACAAACTTGGACCTGGCTGCAGCTACTGAAAAGCTAGAGGCTGTAAGGAGGAAACTTGTG
Seq A exon
GATCTGGATCATAATCTGAGCAGACTTACAGCTTCATTTGAAAAGGCAACAGCTGAGAAGGTCCGGTGTCAGGAAGAAGTGAATCAAACCAATAAGACGATCGACCTAGCCAACAAACTTGTCAGTGAACTTGAG
Seq C2 exon
TCAGAGAAGATTCGATGGGGTCAGTCCATTAAGTCCTTTGAAACTCAAGAGAAGACACTGTGTGGAGATGTGCTCCTCACGGCGGCATTTGTGTCTTACATTGGGTCCTTCACAAGACAGTATCGCCAGGAACTGGTGGACTGCAAGTGGATTCCATTTCTTCAGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'79-73,'79-72,81-73
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(9.6=100),PF060097=Laminin_II=PU(21.8=55.9)
A:
PF127772=MT=FE(12.8=100),PF060097=Laminin_II=FE(50.6=100)
C2:
PF127772=MT=PD(15.4=93.0),PF060097=Laminin_II=PD(24.1=36.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGATGTGGAGCCCAAACG
R:
CTTGCAGTCCACCAGTTCCTG
Band lengths:
244-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types