HsaEX6007419 @ hg19
Exon Skipping
Gene
ENSG00000105877 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:2942]
Coordinates
chr7:21628130-21630640:+
Coord C1 exon
chr7:21628130-21628254
Coord A exon
chr7:21628826-21629021
Coord C2 exon
chr7:21630536-21630640
Length
196 bp
Sequences
Splice sites
3' ss Seq
GAAAAACCTTATTCCTACAGATT
3' ss Score
6.22
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
ATTGAATGTGGTCATGTAGTTCTTAACAAGAACATGCCATTTACCTCAGGAAATATGAAATGGGCCCAGCAGGTTCTCCAACGACTTCAAATGTTTTGGTCAAACTTCGCATCTCTCCGTTATCT
Seq A exon
ATTTTTGGGCAATCCTGATCACGCTTTAGTTTATCAAAAGTATGTTGAAATGACCACTTTGCTTGATCAATTTGAAAGTCGTATCTATAATGAATGGAAAAGTAATGTGGATGAAATCTGTGAATTCAATTTGAATCAACCCTTGGTTAAATTCAGTGCCATAAATGGTCTTCTCTGTGTCAATTTTGACCCAAAG
Seq C2 exon
CTAGTGGCTGTATTGAGAGAAGTGAAATATCTTTTGATGTTGAAGAAACAAGACATACCAGATTCAGCTTTAGCCATCTTCAAGAAAAGGAACACTATTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(7.1=100)
A:
PF083857=DHC_N1=FE(11.2=100)
C2:
PF083857=DHC_N1=FE(5.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGTGGTCATGTAGTTCTTAACA
R:
AGTGTTCCTTTTCTTGAAGATGGCT
Band lengths:
219-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)