MmuEX6083404 @ mm10
Exon Skipping
Gene
ENSMUSG00000018581 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:118131274-118142371:-
Coord C1 exon
chr12:118142247-118142371
Coord A exon
chr12:118140572-118140767
Coord C2 exon
chr12:118131274-118131378
Length
196 bp
Sequences
Splice sites
3' ss Seq
GAGAAACCTTGTTGCTACAGATT
3' ss Score
4.87
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATTGAACACGGGCATGAAATTCTGAACAAGAATATGCCATTCACCTCTGGAAATATTAAGTGGGCCAGAATGCTCCTTGAACGCCTTCAAATGTTCTGGTCAAACTTTACATCTCTTCATTATCT
Seq A exon
ATTTCCAGACAGTCCTGATGAGGCTGCAGTCTGTCAGAAGTATGCTGAAATGACCACTTTGCTGGATCAATTTGAAAGTCACATCTATAGTGAATGGAGAAGAAATGTGGACGAAACCTGTGAATTTAATCTGAATCAACCCTTGGTTAAATTCAGTCCCATAAACGGCCTTCTTAGTGTCAACTTTGACCCAAAG
Seq C2 exon
CTTGTGGCGGTGCTGAGAGAAGTCAAATACCTTTTGATGCTGAAGAAGTCCGACATACCAGATTCAGCTTTAGGCATTTTCCAGAAAAGGAACATTATTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'14-12,'14-11,15-12=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(7.1=100)
A:
PF083857=DHC_N1=FE(11.2=100)
C2:
PF083857=DHC_N1=FE(5.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACACGGGCATGAAATTCTGA
R:
ATGTTCCTTTTCTGGAAAATGCCT
Band lengths:
218-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types