RnoEX6030060 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:146045594-146050430:-
Coord C1 exon
chr6:146050306-146050430
Coord A exon
chr6:146048621-146048816
Coord C2 exon
chr6:146045594-146045698
Length
196 bp
Sequences
Splice sites
3' ss Seq
GAAAAACCTTGTTGCTGCAGATT
3' ss Score
6
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
ATTGAACACGGGCATGAAATTCTCAACAAGAATATGCCATTCACCTCTGGAAATATTAAATGGGCCAGAATGCTCCTCGAACGCCTTCAAATGTTCTGGTCAAACTTTACATCTCTCCATTATCT
Seq A exon
ATTTCCAGACAGTCCTGATGAGGCTGCAGTCTGTCAGAAGTATGCTGAAATGACCACTTTGCTGGATCAATTTGAAAGTCGCATCTATAGTGAATGGAGAAGAAATGTGGACAAAACCTGTGAATTTAATCTGAATCAGCCCTTGGTTAAATTCAGTCCCATAAACGGCCTTCTTAGTGTCAACTTTGACCCAAAG
Seq C2 exon
CTTGTGGCGGTACTGAGAGAAGTCAAATACCTTTTGATGCTGAAGAAGTCCAACATACCAGATTCGGCTTTAGGCATTTTCCAGAAAAAGAACATTATTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-'11-11,'11-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(7.1=100)
A:
PF083857=DHC_N1=FE(11.2=100)
C2:
PF083857=DHC_N1=FE(5.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACACGGGCATGAAATTCTCA
R:
ATGTTCTTTTTCTGGAAAATGCCT
Band lengths:
218-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]