HsaEX6007419 @ hg38
Exon Skipping
Gene
ENSG00000105877 | DNAH11
Description
dynein axonemal heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr7:21588512-21591022:+
Coord C1 exon
chr7:21588512-21588636
Coord A exon
chr7:21589208-21589403
Coord C2 exon
chr7:21590918-21591022
Length
196 bp
Sequences
Splice sites
3' ss Seq
GAAAAACCTTATTCCTACAGATT
3' ss Score
6.22
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
ATTGAATGTGGTCATGTAGTTCTTAACAAGAACATGCCATTTACCTCAGGAAATATGAAATGGGCCCAGCAGGTTCTCCAACGACTTCAAATGTTTTGGTCAAACTTCGCATCTCTCCGTTATCT
Seq A exon
ATTTTTGGGCAATCCTGATCACGCTTTAGTTTATCAAAAGTATGTTGAAATGACCACTTTGCTTGATCAATTTGAAAGTCGTATCTATAATGAATGGAAAAGTAATGTGGATGAAATCTGTGAATTCAATTTGAATCAACCCTTGGTTAAATTCAGTGCCATAAATGGTCTTCTCTGTGTCAATTTTGACCCAAAG
Seq C2 exon
CTAGTGGCTGTATTGAGAGAAGTGAAATATCTTTTGATGTTGAAGAAACAAGACATACCAGATTCAGCTTTAGCCATCTTCAAGAAAAGGAACACTATTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(7.1=100)
A:
PF083857=DHC_N1=FE(11.2=100)
C2:
PF083857=DHC_N1=FE(5.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGTGGTCATGTAGTTCTTAACA
R:
AGTGTTCCTTTTCTTGAAGATGGCT
Band lengths:
219-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains