HsaEX6007422 @ hg19
Exon Skipping
Gene
ENSG00000105877 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:2942]
Coordinates
chr7:21611424-21627819:+
Coord C1 exon
chr7:21611424-21611591
Coord A exon
chr7:21621523-21621639
Coord C2 exon
chr7:21627682-21627819
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTTCACTTTGAATTTTACAGGAG
3' ss Score
8.76
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GATATATTTGCCACCACTTTGGAATTTGAAAAGCTGGAAAGACTGGAATTTGGTGGTACCAAAGGAGCAATTTTAAATGGACAAGTCCACGAGATGAGTGAAGAACTTATGGAACTCTGTAAACTTTTTAAACAGAGCACTTATGACCCATCTGATTGCACTAACATG
Seq A exon
GAGTTTGAAAGTGATTATGTGGCATTTAAGTCCAAAACTCTGGAATTTGACAGAAGGCTTGGGACAATTATTTGTGAAGCTTTCTTTAACTGCAATGGCTTAGAAGCTGCATTTAAG
Seq C2 exon
CTTTTGACCATATTTGGAAATTTTCTAGAGAAGCCAGTTGTCATGGAAATTTTCAGCCTACATTACAGCACACTAGTGCATATGTTTAATACAGAGCTGGATGTGTGTAAGCAACTGTATAATGAACACATGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(9.5=100)
A:
PF083857=DHC_N1=FE(6.6=100)
C2:
PF083857=DHC_N1=FE(7.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGAAAGACTGGAATTTGGT
R:
GCTTACACACATCCAGCTCTGT
Band lengths:
249-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)