MmuEX0014961 @ mm10
Exon Skipping
Gene
ENSMUSG00000018581 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:118142792-118177648:-
Coord C1 exon
chr12:118177481-118177648
Coord A exon
chr12:118157281-118157397
Coord C2 exon
chr12:118142792-118142929
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTTTACTTTGTATGACACAGGAG
3' ss Score
6.08
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GATATGTTTGTCACCATACTGGAATTTGAGAAACTGGAAAGACTGGAATTTGGTGGCAGCAAGGGAGCCGTCCTAAATGCACAAATCCACTCAACAAGTGAGGAATTTATCGAATGCTGCAAAGTTTTCCAACAGAGCACGTACGATCCGTCTGACTGTGATGACATG
Seq A exon
GAGTTCGAAAGTGATTATTTCAAATTTAAGTCCAGAACCCTGGATTTTGACAGAAGGCTTGGGACGCTGCTTTGCGAAGGTCTCAGCAACTGCAGTGGTTTGGAGTCTGCATTTAAG
Seq C2 exon
CTTTTGACCATATTTGGGAACTTTCTAGAGAAACCAGTTGTCATGGAAATGTTCAGCCCACATTACAGCACATTATTGAACATGTTTAATGCAGAGTTGGATGTGTGTAAGCAACTGTATGATGAACACATGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'11-8,'11-7,12-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(9.5=100)
A:
PF083857=DHC_N1=FE(6.6=100)
C2:
PF083857=DHC_N1=FE(7.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTGGAATTTGGTGGCAGC
R:
TGCTTACACACATCCAACTCTGC
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types