BtaEX0011572 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30444198-30466088:+
Coord C1 exon
chr4:30444198-30444365
Coord A exon
chr4:30457721-30457837
Coord C2 exon
chr4:30465951-30466088
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTTTATTTTGAATTTTATAGGAG
3' ss Score
8.55
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GATATATTTGTCACCATATTGGAATTTGAAAAGCTGGAAAGACTTGAATTTGGTGGTACCAAGGGAGCAATTTTAAATGGACAGATCTATGAGATGAGTGAAGAATTTATGAAACACTGGAAGATTTTTAAACAGCGCACGTATGACCCATCTGATTACAATAACATG
Seq A exon
GAGTTTGAAAGTGATTATGTTGTATTTAAGTCCAAAACTCTGGATTTTGACAGAAGGCTTGGGACAGTTCTTTGTGAAGCTTTCTTCAACTGCAATGGTCTAGAAGCTGCGTTTAAG
Seq C2 exon
CTTTTGACCGTATTTGGGAATTTTCTTGAGAAACCAGTTGTCATGGAAATTTTCAGCCCACATTACAGCACACTTGTGCACATGTTCAGTGCAGAGTTGGATATGTGTAAGCAATTGTATAATGAACACATCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(9.5=100)
A:
PF083857=DHC_N1=FE(6.6=100)
C2:
PF083857=DHC_N1=FE(7.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAATTTGAAAAGCTGGAAAGACT
R:
TCTGCACTGAACATGTGCACA
Band lengths:
244-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development