RnoEX0028425 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:146050864-146075775:-
Coord C1 exon
chr6:146075608-146075775
Coord A exon
chr6:146061241-146061357
Coord C2 exon
chr6:146050864-146051001
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTTTACTTTTCATGATGCAGGAG
3' ss Score
6.84
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GATATGTTTGTCACCATACTGGAATTTGAGAAACTGGAAAGACTGGAATTTGGTGGCAGCAAGGGGGCAGTCCTAAATGCACAAATCCACTCAATGAAGGAGGAATTCATCGAGTGCTGCAATGTCTTCCGACAGAGCATTTACGATCCATCTGACTGTGACAGCATG
Seq A exon
GAGTTCGAAAGTGATTATTTCCAATTCAAGTCCAAAACCCTGGATTTTGACAGAAGGCTTGGGACGCTGCTTTGTGAGGGTCTCAGCAACTGTAGTGGTTTGGAGTCTGCGTTTAAG
Seq C2 exon
CTTTTGACCATATTTGGGAATTTTCTAGAGAAACCAGTTGTCATGGAAATTTTCAGCCCACATTATAGCACACTATTGAACATGTTTAATGCAGAGTTGGATATGTGTAAGCGACTGTATGATGAACACATGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-'8-8,'8-7,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(9.5=100)
A:
PF083857=DHC_N1=FE(6.6=100)
C2:
PF083857=DHC_N1=FE(7.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTGGAATTTGGTGGCAGC
R:
TCGCTTACACATATCCAACTCTGC
Band lengths:
243-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]