Special

MmuEX0014961 @ mm9

Exon Skipping

Gene
ENSMUSG00000018581 | Dnahc11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:119381265-119416121:-
Coord C1 exon
chr12:119415954-119416121
Coord A exon
chr12:119395754-119395870
Coord C2 exon
chr12:119381265-119381402
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTTTACTTTGTATGACACAGGAG
3' ss Score
6.08
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GATATGTTTGTCACCATACTGGAATTTGAGAAACTGGAAAGACTGGAATTTGGTGGCAGCAAGGGAGCCGTCCTAAATGCACAAATCCACTCAACAAGTGAGGAATTTATCGAATGCTGCAAAGTTTTCCAACAGAGCACGTACGATCCGTCTGACTGTGATGACATG
Seq A exon
GAGTTCGAAAGTGATTATTTCAAATTTAAGTCCAGAACCCTGGATTTTGACAGAAGGCTTGGGACGCTGCTTTGCGAAGGTCTCAGCAACTGCAGTGGTTTGGAGTCTGCATTTAAG
Seq C2 exon
CTTTTGACCATATTTGGGAACTTTCTAGAGAAACCAGTTGTCATGGAAATGTTCAGCCCACATTACAGCACATTATTGAACATGTTTAATGCAGAGTTGGATGTGTGTAAGCAACTGTATGATGAACACATGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'8-8,'8-7,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF083857=DHC_N1=FE(9.5=100)

							
A:
PF083857=DHC_N1=FE(6.6=100)

							
C2:
PF083857=DHC_N1=FE(7.8=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000081867





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000081867f560A
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr7:21581905-21582021 
HIGH PSI
HsaEX6007422
(DNAH11)
Human
(hg19)
chr7:21621523-21621639 
HsaEX6007422
(DNAH11)
Rat
(rn6)
chr6:146061241-146061357 
HIGH PSI
RnoEX0028425
(Dnah11)
Cow
(bosTau6)
chr4:30457721-30457837 
ALTERNATIVE
BtaEX0011572
(DNAH11)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
AGACTGGAATTTGGTGGCAGC

				
R: 
TGCTTACACACATCCAACTCTGC

				
Band lengths: 
242-359

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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