HsaEX6016321 @ hg19
Exon Skipping
Gene
ENSG00000082438 | COBLL1
Description
COBL-like 1 [Source:HGNC Symbol;Acc:23571]
Coordinates
chr2:165550779-165557266:-
Coord C1 exon
chr2:165557032-165557266
Coord A exon
chr2:165555915-165556009
Coord C2 exon
chr2:165550779-165552343
Length
95 bp
Sequences
Splice sites
3' ss Seq
TACAATGTCGTATCTTCCAGAGA
3' ss Score
8.58
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
CTGGAATAAGCTCTGATTATAGCCTTGAAGAGATAGATGAAAAGGAAGAACTGAGTGAAGTGCCTAAAGTTGAAGCTGAAAATATTTCTCCGAAGTCACAAGATATTCCTTTTGTATCTACTGATATAATAAATACACTGAAAAATGATCCTGACTCAGCCCTTGGCAATGGTAGTGGAGAGTTCTCACAAAACTCCATGGAAGAAAAACAAGAAACTAAAAGCACAGATGGACA
Seq A exon
AGAACCACACAGTGTAGTATATGATACAAGCAATGGAAAGAAGGTAGTTGACAGTATAAGAAACTTGAAGTCGTTGGGCCCAAACCAAGAGAATG
Seq C2 exon
TTCAAAATGAAATAATTGTCTATCCAGAGAACACAGAAGACAATATGAAAAATGGAGTGAAGAAAACAGAAATCAATGTAGAAGGTGTTGCCAAAAATAACAACATTGATATGGAAGTTGAGAGACCATCAAACTCTGAGGCACATGAAACTGATACTGCTATAAGTTACAAGGAAAACCATCTAGCAGCTTCATCAGTACCAGATCAAAAACTGAATCAACCCAGTGCAGAAAAGACAAAAGATGCAGCAATTCAGACAACCCCTTCTTGTAACAGTTTTGATGGGAAACACCAAGATCATAATTTATCTGACTCCAAAGTTGAAGAATGTGTGCAAACTTCAAATAACAACATATCAACTCAACACTCATGCTTAAGTTCACAAGATTCTGTAAATACCTCAAGGGAATTCAGGAGTCAAGGCACCCTAATTATACATTCAGAAGATCCGCTTACCGTAAAAGATCCAATTTGTGCACATGGTAATGATGATCTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000082438-'39-43,'39-40,40-43=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.889 C2=0.929
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTGGCAATGGTAGTGGAG
R:
TGGCAACACCTTCTACATTGA
Band lengths:
169-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)