GgaEX1016195 @ galGal4
Exon Skipping
Gene
ENSGALG00000011068 | COBLL1
Description
cordon-bleu WH2 repeat protein-like 1 [Source:HGNC Symbol;Acc:HGNC:23571]
Coordinates
chr7:19607551-19612528:+
Coord C1 exon
chr7:19607551-19607809
Coord A exon
chr7:19610243-19610328
Coord C2 exon
chr7:19610910-19612528
Length
86 bp
Sequences
Splice sites
3' ss Seq
TGTACTGTTGTGCTTTGCAGAGA
3' ss Score
9.47
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GTGCAAGGACATCAGAATACAGTCTGGAAGAAATTGATGAAAAGGAAGAGATGAGTGTGCAAGAGGGAGAGGAAAGTGGAAGTACAGGTACCTCTCTCAGGACAGGAGAGGCTACTGCAGCCTTCAGCTCTATGGAGGTACCTCTGGAAACTGAAAGAAATGATTGTGCTTCATCAGTTCCTGTTCCTGGCACTGTTTCTGTAGACAACTCACAAAGCTTCAAGGAAGAAAAACAAGAAAATATGAGCACAGATGGCAA
Seq A exon
AGAACTACAGACTCAGATAAGCAGTGACCAAGCTGCATTTGAGAAAGACAGGAAGCTTAGAATTTTGGAAGAAAATAAAAATTATG
Seq C2 exon
ATCACAGTGATAGAACACTCCTTCCAACAAATGAAGAAGGGGGAGAAGAGCAGACAGCAAAAATTAAAGCAGTAGATTTTAGAGAAAACAGCAAGCTTGAAGTTGACAGACTATCAAACTGCCAAGCATCTAAAAATGACATCGCCATAAGTCATAAGAATTACAGTCAACTGATTCCAGGAAAGCAAGATGAGAAAACAAGTCAGACCAGCCTGGACACCGTAAAAACTCATGATGTTGCAATTCAGACAGGTCCATTGGTTAGCAATTTGGGAAGGACTGCACAGAAAGAAATGATTGTTCCTCAAGAATATGAATCGTCCACATTCAAAGGAATGGTCCATCAACACAGTACAGACACAAACAACCCTGGTCTTCGGGTGATGCAAGGAGTACATAAGGATGAAGAAATTTCAACAGAACGAAATCTTCAGAGACAAGAAGTTTCATATGAAAAAACGATACCCATGAAAGATGAAATTCATATTTGTACAAACAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011068_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.967 C2=0.867
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGTACCTCTGGAAACTGA
R:
GTCTGCTCTTCTCCCCCTTCT
Band lengths:
182-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]