MmuEX6101670 @ mm10
Exon Skipping
Gene
ENSMUSG00000034903 | Cobll1
Description
Cobl-like 1 [Source:MGI Symbol;Acc:MGI:2442894]
Coordinates
chr2:65097633-65103394:-
Coord C1 exon
chr2:65103160-65103394
Coord A exon
chr2:65102072-65102166
Coord C2 exon
chr2:65097633-65099392
Length
95 bp
Sequences
Splice sites
3' ss Seq
TACAGTGTCTTGTCTTCCAGAGG
3' ss Score
7.92
5' ss Seq
AGAGTGGTG
5' ss Score
-15.69
Exon sequences
Seq C1 exon
CTGGTGTAAGCTCTGATTACAGTCTTGAGGAGATAGATGAAAAGGAAGAACTCAGCGAGGCATCTAAAGATCCGGCTGGAAGTATTTCTGTGAAGTCGCCTGACATTGCTTCAGCATCGACTGATATGAGAATTACAGTGGAGAAGGATCCTGATTCAGCCCTCGGCATCAGTGATGGAGAGACCTCTCCAAGCTCCAAGGGAAAAACTCAAGAAGGCAGAAGCACAGAGGGGCA
Seq A exon
AGGGCCGTATCATCCTGTTGTAGGCCATATAGGCAATGAGGACAGAGTATCTGACAGTATAAAAGACATGAAGACACTGGGCCCAAACCAGGAGA
Seq C2 exon
TAGTTCAAAATGAAATCATGGTCTGTGCCACAAGCACAGATTATGTGAAAAACAGACCGGGGAAAATGGAAACCACCATAGAAGGCGAAGGCGAAGCTCTGAAGAAAGCCAGCGACATGGAAACTGATAGATTGTCAGGCTCTCCTGCATGTAGAATGGACAATGTTAAAAGTTCGAGGGAAAATCATCTAACAGCATCGCCAGGACCAGATCAAAAATTGAATCAACCAGGTGTAGAGAAGACGAAAATGCAGGATGCAGCAATTCAGGCCACCCCTGCCCGCGGCACTTTTGATGGGAATCACGAAGTCAGTAATTCATCTGACCCCAGGGCTGATGAGACTGTGCAGACTTCGGATGGCAGCATATCAGCTCAGCACTCCTCTGCAAGTCTCCAGGATTCTGTAAATGCCTCAAGAGAATTCAGGAGTCAGGGCACCTCAACTTATGTACAAGATAGACTCCCTGAGAAAGAGCCAGCTTGTACATATGGGAACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034903-'43-33,'43-32,44-33
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.983
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCTCTCCAAGCTCCAAGG
R:
TCCATGTCGCTGGCTTTCTTC
Band lengths:
176-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types