Special

MmuEX6101670 @ mm9

Exon Skipping

Gene
ENSMUSG00000034903 | Cobll1
Description
Cobl-like 1 [Source:MGI Symbol;Acc:MGI:2442894]
Coordinates
chr2:64935690-64941451:-
Coord C1 exon
chr2:64941217-64941451
Coord A exon
chr2:64940126-64940223
Coord C2 exon
chr2:64935690-64937449
Length
98 bp
Sequences
Splice sites
3' ss Seq
TACAGTGTCTTGTCTTCCAGAGG
3' ss Score
7.92
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
CTGGTGTAAGCTCTGATTACAGTCTTGAGGAGATAGATGAAAAGGAAGAACTCAGCGAGGCATCTAAAGATCCGGCTGGAAGTATTTCTGTGAAGTCGCCTGACATTGCTTCAGCATCGACTGATATGAGAATTACAGTGGAGAAGGATCCTGATTCAGCCCTCGGCATCAGTGATGGAGAGACCTCTCCAAGCTCCAAGGGAAAAACTCAAGAAGGCAGAAGCACAGAGGGGCA
Seq A exon
AGGGCCGTATCATCCTGTTGTAGGCCATATAGGCAATGAGGACAGAGTATCTGACAGTATAAAAGACATGAAGACACTGGGCCCAAACCAGGAGAGTG
Seq C2 exon
TAGTTCAAAATGAAATCATGGTCTGTGCCACAAGCACAGATTATGTGAAAAACAGACCGGGGAAAATGGAAACCACCATAGAAGGCGAAGGCGAAGCTCTGAAGAAAGCCAGCGACATGGAAACTGATAGATTGTCAGGCTCTCCTGCATGTAGAATGGACAATGTTAAAAGTTCGAGGGAAAATCATCTAACAGCATCGCCAGGACCAGATCAAAAATTGAATCAACCAGGTGTAGAGAAGACGAAAATGCAGGATGCAGCAATTCAGGCCACCCCTGCCCGCGGCACTTTTGATGGGAATCACGAAGTCAGTAATTCATCTGACCCCAGGGCTGATGAGACTGTGCAGACTTCGGATGGCAGCATATCAGCTCAGCACTCCTCTGCAAGTCTCCAGGATTCTGTAAATGCCTCAAGAGAATTCAGGAGTCAGGGCACCTCAACTTATGTACAAGATAGACTCCCTGAGAAAGAGCCAGCTTGTACATATGGGAACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034903-'26-25,'26-24,27-25=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=1.000 A=1.000 C2=0.983
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000072693





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000072693f3343A, ENSMUSP00000088412, ENSMUSP00000099787, ENSMUSP00000108048, ENSMUSP00000108049, ENSMUSP00000108050
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr2:164699405-164699499 
HIGH PSI
HsaEX6016321
(COBLL1)
Human
(hg19)
chr2:165555915-165556009 
HIGH PSI
HsaEX6016321
(COBLL1)
Rat
(rn6)
chr3:51158537-51158634 
ALTERNATIVE
RnoEX6017102
(Cobll1)
Cow
(bosTau6)
chr2:31683841-31683935 
Chicken
(galGal4)
chr7:19610243-19610328 
HIGH PSI
GgaEX1016195
(COBLL1)
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
chr9:50495124-50495200 
HIGH PSI
DreEX6038655
(COBLL1 (2 of 2))
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
AGACCTCTCCAAGCTCCAAGG

				
R: 
TCCATGTCGCTGGCTTTCTTC

				
Band lengths: 
176-274

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]










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