HsaEX6016672 @ hg19
Exon Skipping
Gene
ENSG00000204334 | AC007405.7
Description
Uncharacterized protein LOC285141 [Source:UniProtKB/Swiss-Prot;Acc:A1L162]
Coordinates
chr2:171641156-171654622:+
Coord C1 exon
chr2:171641156-171641343
Coord A exon
chr2:171649373-171649430
Coord C2 exon
chr2:171654551-171654622
Length
58 bp
Sequences
Splice sites
3' ss Seq
AAGAATTTAATGTTTTCCAGTTT
3' ss Score
4.92
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
GTGAAGTGAGCAAAGATGCAGTCATTGTAAAGCAGGAGAAAAATAATGAATATTGCCTTCAGGATATTGATGATAAATTGTCAGAATCAGCAGAGGATGATGGTGAAGATGATACCAATGATGAAGATGATGATGAAGATAGTAACCCTAAAAAGAATACTCAGGCCCCACTAGAGTTAATGGCAGAA
Seq A exon
TTTCTGAGAGCAGAAATGGCCCGAGAGTACCAGCTGGCAAAAAAATTATGTCAGATGA
Seq C2 exon
TCCTAATCTATGAACCAGAAAATCCTGAGGCCAAGGAGTTTTTCACACTTATTGAAGAAATGTTGCTGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204334-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.786 A=0.200 C2=0.780
Domain overlap (PFAM):
C1:
NO
A:
PF148531=Fis1_TPR_C=PU(33.3=65.0)
C2:
PF148531=Fis1_TPR_C=FE(61.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGAGGATGATGGTGAAGA
R:
CCTTGGCCTCAGGATTTTCTGG
Band lengths:
137-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)