MmuEX6102041 @ mm9
Exon Skipping
Gene
ENSMUSG00000075302 | 4933404M02Rik
Description
RIKEN cDNA 4933404M02 gene [Source:MGI Symbol;Acc:MGI:1913998]
Coordinates
chr2:70372299-70377806:+
Coord C1 exon
chr2:70372299-70372480
Coord A exon
chr2:70374202-70374259
Coord C2 exon
chr2:70377735-70377806
Length
58 bp
Sequences
Splice sites
3' ss Seq
CTGAAGAATTTGTTTTCCAGTTC
3' ss Score
4.67
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
GTGAAACAAGCAAGGATTTGGTCCTTGCAAAGCAAGAGGGAAATAGTGACTATTGCCTTAAGGACATTGAAGAGAACTTGTCAGACTCGACAGATGGTGATGGTGAAGAGGACAGCAGCAACGACGATGACGAAGGCCCCACTAAGAAGGCGACTCAAGCCCCACTGGAGCTAATGGCAGAA
Seq A exon
TTCCTGAGAGCAGAAATGGGCCGAGACTACCAGCTGGCAAAAAAATTATGTCAGATGA
Seq C2 exon
TCCTAATCTATGAACCAGAAAATCCTGTGGCCAAGGAATTTTTCTCACTTATTGAAGAGATATTGCTGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075302-'13-12,'13-11,14-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.754 A=0.100 C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
PF148531=Fis1_TPR_C=PU(32.5=65.0)
C2:
PF148531=Fis1_TPR_C=FE(60.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTCGACAGATGGTGATGGT
R:
TGGCCACAGGATTTTCTGGTT
Band lengths:
133-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: