RnoEX0032999 @ rn6
Exon Skipping
Gene
ENSRNOG00000056087 | Erich2
Description
glutamate-rich 2 [Source:RGD Symbol;Acc:1563852]
Coordinates
chr3:56829278-56837779:+
Coord C1 exon
chr3:56829278-56829459
Coord A exon
chr3:56834999-56835056
Coord C2 exon
chr3:56837708-56837779
Length
58 bp
Sequences
Splice sites
3' ss Seq
CTGAAGAATTTGTTTTCCAGTTC
3' ss Score
4.67
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
GTGAAGTGAACAAGGATTTGGTCCTTGCAAAGCAAGAGAAAAATAGTGAGTATTGCCTTGAAGACATTGAGGAGAACTTGTCAGACTCAACGGATGGTGATGGCGAAGAGGACAGCAACAACGAAGACGACGAAGGCCCCGCTAAGAAGGAGACTCGAGCCCCACTGGAGCTAATGGCAGAA
Seq A exon
TTCCTGAGAGCAGAAATGGGTCGAGACTACCAGCTGGCAAAAAAGTTATGTCAGATGA
Seq C2 exon
TCCTAATCTATGAACCAGAAAATCCTGTGGCCAAAGAATTTTTCTCACTTATTGAAGAAATATTGCTGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056087-'11-15,'11-12,13-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.738 A=0.050 C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
PF148531=Fis1_TPR_C=PU(32.5=65.0)
C2:
PF148531=Fis1_TPR_C=FE(60.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCAACGGATGGTGATGGC
R:
TGGCCACAGGATTTTCTGGTT
Band lengths:
132-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]