HsaEX6016672 @ hg38
Exon Skipping
Gene
ENSG00000204334 | ERICH2
Description
glutamate rich 2 [Source:HGNC Symbol;Acc:HGNC:44395]
Coordinates
chr2:170784646-170798112:+
Coord C1 exon
chr2:170784646-170784833
Coord A exon
chr2:170792863-170792920
Coord C2 exon
chr2:170798041-170798112
Length
58 bp
Sequences
Splice sites
3' ss Seq
AAGAATTTAATGTTTTCCAGTTT
3' ss Score
4.92
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
GTGAAGTGAGCAAAGATGCAGTCATTGTAAAGCAGGAGAAAAATAATGAATATTGCCTTCAGGATATTGATGATAAATTGTCAGAATCAGCAGAGGATGATGGTGAAGATGATACCAATGATGAAGATGATGATGAAGATAGTAACCCTAAAAAGAATACTCAGGCCCCACTAGAGTTAATGGCAGAA
Seq A exon
TTTCTGAGAGCAGAAATGGCCCGAGAGTACCAGCTGGCAAAAAAATTATGTCAGATGA
Seq C2 exon
TCCTAATCTATGAACCAGAAAATCCTGAGGCCAAGGAGTTTTTCACACTTATTGAAGAAATGTTGCTGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204334-'6-12,'6-9,9-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.825 A=0.150 C2=0.840
Domain overlap (PFAM):
C1:
PF118713=DUF3391=FE(55.4=100),PF127532=Nro1=FE(53.0=100)
A:
PF118713=DUF3391=FE(17.0=100),PF127532=Nro1=FE(16.2=100)
C2:
PF148531=Fis1_TPR_C=FE(61.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGAGGATGATGGTGAAGA
R:
CCTTGGCCTCAGGATTTTCTGG
Band lengths:
137-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains