HsaEX6017571 @ hg19
Exon Skipping
Gene
ENSG00000118997 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:18661]
Coordinates
chr2:196759700-196765218:-
Coord C1 exon
chr2:196765006-196765218
Coord A exon
chr2:196762391-196762489
Coord C2 exon
chr2:196759700-196759948
Length
99 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTTTTTTTTTTTTAGCTG
3' ss Score
10.4
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GCTCTCTTTCGGACAGTAGCAATGATGGTACCTGACTATGCCATGATTGCTGAAATAGTCCTATACTCCTGTGGGTTTGTCACTGCTCGACCACTGTCTGTAAAAATTGTGGCTACGTATCGCTTGTGTTCAGAGCAGCTGTCATCTCAACATCACTACGACTATGGAATGAGAGCCGTGAAGTCAGTTCTTACTGCTGCTGGGAATCTGAAG
Seq A exon
CTGAAATATCCAAATGAAAATGAAGAAATTTTGCTGCTTAGATCTATCATTGATGTAAATCTGCCAAAATTTTTATCCCATGATTTACCACTCTTTGAG
Seq C2 exon
GGAATTACTTCGGATTTGTTTCCTGGGGTAAAATTACCAAAACCAGATTACAATGATTTGCTGGCAGCTATCAAAGACAATTGTGCCTCCATGAATTTGCAAATGACTGCATTCTTTTCCGAGAAGATTCTTCAAGTATATGAAATGATGATTGTGCGTCATGGTTTTATGATTGTTGGAGAACCATTTGGAGGAAAAACTAGTGCATATCGTGTCTTAGCTGGAGCACTAAATGATATATGTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118997-'32-34,'32-33,33-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(30.3=100)
A:
PF127742=AAA_6=PD(1.3=9.1)
C2:
PF077289=AAA_5=PU(19.4=33.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGTCACTGCTCGACCACT
R:
ACCCCAGGAAACAAATCCGAA
Band lengths:
168-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)