GgaEX1020208 @ galGal4
Exon Skipping
Gene
ENSGALG00000007841 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr7:9234386-9236495:-
Coord C1 exon
chr7:9236283-9236495
Coord A exon
chr7:9235179-9235277
Coord C2 exon
chr7:9234386-9234634
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTATTTAATATCTTTTTTAGCTG
3' ss Score
7.73
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
GCTCTCTTTAGAACAGTAGCTATGATGGTTCCTGATTATGCCATGATTGCAGAGATAGTTCTGTATTCTTGTGGTTTTGTTTCTGCACGACCTCTGTCTGTAAAAATTGTAGCTACGTACCGTCTGTGTTCTGAGCAGTTGTCGTCCCAGCACCATTATGATTATGGGATGAGAGCTGTGAAGTCAGTACTTACTGCTGCTGGCAACCTGAAG
Seq A exon
CTGAAATATCCAATGGAAGATGAAGAAATTTTGCTACTTAGATCCATTACAGATGTCAACCTGCCTAAATTCTTGTCTCATGATTTACCACTTTTTGAG
Seq C2 exon
GGTATTACCTCTGATTTGTTTCCTGGTGTGAAGCTGCCAAAACCAGACTACAATGACCTGTTGGAAGCCATCAAAACAAACTGTGTTGCTATGAATTTGCAAATGACTGATGTATTTACTATGAAGATCCTGCAGATATATGAGATGATGATTGTGCGTCATGGCTTTATGATAGTTGGAGAGCCTTTTGGAGGAAAAACTTGTGCGTATCGAGTTCTGGCAGGAGCACTGGGGGACATATGCGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841-'29-34,'29-33,30-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(30.3=100)
A:
PF127742=AAA_6=PD(1.3=9.1)
C2:
PF077289=AAA_5=PU(19.4=33.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGCACGACCTCTGTCTGT
R:
TCTGGTTTTGGCAGCTTCACA
Band lengths:
180-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]