MmuEX0015016 @ mm9
Exon Skipping
Gene
ENSMUSG00000041144 | Dnahc7c
Description
dynein, axonemal, heavy chain 7B [Source:MGI Symbol;Acc:MGI:2684953]
Coordinates
chr1:46258037-46264538:+
Coord C1 exon
chr1:46258037-46258249
Coord A exon
chr1:46261063-46261161
Coord C2 exon
chr1:46264290-46264538
Length
99 bp
Sequences
Splice sites
3' ss Seq
ATGACTGTATTTTCTTTTAGCTG
3' ss Score
8.72
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GCTCTGTTCCGGACAGTGGCCATGATGGTGCCTGACTACGCCATGATTGCCGAGATCGTGCTGTACTCTTGTGGCTTTGTCACTGCGAGGCCGCTGTCCATAAAGATTGTGGCGACATACCGCTTGTGCTCAGAGCAACTGTCCTCCCAGCATCACTATAACTATGGGATGCGAGCTGTGAAGTCTGTGCTCACAGCTGCTGGCAATCTGAAG
Seq A exon
CTGAAATATCCAAATGAAAATGAAGAAATTTTGCTACTTAGATCTATTATTGATGTAAATCTGCCAAAGTTTTTATCCCATGATTTGCCACTCTTTGAG
Seq C2 exon
GGAATTACCTCAGATTTGTTTCCTGGGGTGAAATTACCAAAGCCAGATTACAATGAACTGCTGGCCGCCATCAGAGAAAACTGCCACACCATGAATTTGCAAATGACCGACTTCTTCTCTGAGAAGATCCTTCAGATCTACGAGATGATGATTGTGCGTCATGGTTTCATGATTGTTGGAGAACCATTTGGAGGGAAGACCAGTGCATATCGTGTTCTAGCTGGAGCATTAAATGACATTTGTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041144-'30-29,'30-28,31-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(32.0=71.2)
A:
PF127742=AAA_6=PD(1.3=2.6),PF077289=AAA_5=PU(19.4=24.1)
C2:
PF077289=AAA_5=PU(19.4=33.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGCAACTGTCCTCCCAG
R:
TGGCAGTTTTCTCTGATGGCG
Band lengths:
170-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: