RnoEX6039692 @ rn6
Exon Skipping
Gene
ENSRNOG00000060984 | Dnah7
Description
dynein, axonemal, heavy chain 7 [Source:RGD Symbol;Acc:621798]
Coordinates
chr9:60236941-60247085:-
Coord C1 exon
chr9:60246873-60247085
Coord A exon
chr9:60239800-60239898
Coord C2 exon
chr9:60236941-60237189
Length
99 bp
Sequences
Splice sites
3' ss Seq
ATGACTCTATTCTCTTTCAGCTG
3' ss Score
10.25
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GCTCTCTTCCGGACAGTTGCCATGATGGTGCCTGACTATGCCATGATTGCTGAGATCGTGCTTTATTCCTGTGGCTTTGTCACTGCACGGCCACTGTCCATAAAAATCGTGGCTACATACCGCTTGTGCTCAGAGCAACTGTCCTCCCAGCACCATTATGACTACGGGATGCGAGCCGTGAAGTCTGTGCTCACAGCTGCTGGCAATTTGAAG
Seq A exon
CTGAAATATCCAAATGAAAATGAAGAAATTTTGCTGCTTAGATCTATTATTGATGTAAACCTGCCGAAGTTTTTATCCCATGATTTGCCACTCTTTGAG
Seq C2 exon
GGAATTACCTCAGATTTGTTTCCTGGGGTGAAATTACCAAAGCCAGATTACAATGATCTGCTGGCCGCCATCAGAGAGAACTGCCACTCCATGAATTTGCAGATGACCAACTTCTTCTCTGAGAAGATCCTTCAGATCTATGAGATGATGATTGTACGCCATGGTTTCATGATTGTTGGAGAGCCGTTTGGAGGCAAGACCAGTGCATATCGTGTTCTAGCTGGAGCATTAGGTGACATTTGTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060984-'24-28,'24-27,25-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(30.2=100)
A:
PF127742=AAA_6=PD(1.9=11.8)
C2:
PF077289=AAA_5=PU(19.4=33.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGCAACTGTCCTCCCAG
R:
GTGGCAGTTCTCTCTGATGGC
Band lengths:
171-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]