BtaEX6010434 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016784 | DNAH7
Description
Bos taurus dynein, axonemal, heavy chain 7 (DNAH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001143874]
Coordinates
chr2:84898739-84907492:-
Coord C1 exon
chr2:84907280-84907492
Coord A exon
chr2:84903969-84904067
Coord C2 exon
chr2:84898739-84898987
Length
99 bp
Sequences
Splice sites
3' ss Seq
ATGACTGTATTTTCTTTCAGCTG
3' ss Score
9.62
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GCGCTCTTTCGGACAGTAGCAATGATGGTGCCTGACTACGCTATGATTGCTGAAATCGTCCTGTACTCCTGTGGCTTTGTCACAGCTCGGCCACTGTCAGTGAAGATTGTGGCTACATATCGCCTGTGTTCAGAGCAGTTGTCGTCACAGCATCACTATGACTATGGAATGAGAGCTGTGAAGTCAGTGCTTACCGCTGCCGGGAATCTAAAG
Seq A exon
CTGAAATATCCAAATGAAAATGAAGAAATTCTGCTGCTTAGATCTATTATTGATGTAAATTTGCCGAAATTTTTATCCCACGATTTACCACTCTTTGAG
Seq C2 exon
GGAATTACTTCAGATTTGTTTCCTGGGGTGAAATTACCAAAACCAGATTACAACGATTTGCTGGGAGCTATCAAAGACAACTGTGACTCCATGAATTTGCAAATGACCAGATTCTTTTCTGAGAAGATTCTTCAGATATATGAAATGATGATTGTGCGTCATGGCTTTATGATTGTTGGAGAACCATTTGGAGGAAAAACCAGTGCATATCGCGTCTTAGCTGGAGCATTAAATGACCTATGTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016784-'28-31,'28-29,29-31=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(30.3=100)
A:
PF127742=AAA_6=PD(1.3=9.1)
C2:
PF077289=AAA_5=PU(19.4=33.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGTGTTCAGAGCAGTTGT
R:
AGTTGTCTTTGATAGCTCCCAGC
Band lengths:
174-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]