DreEX6036409 @ danRer10
Exon Skipping
Gene
ENSDARG00000060165 | dnah7
Description
dynein, axonemal, heavy chain 7 [Source:ZFIN;Acc:ZDB-GENE-070912-282]
Coordinates
chr9:25205721-25212596:-
Coord C1 exon
chr9:25212384-25212596
Coord A exon
chr9:25206058-25206156
Coord C2 exon
chr9:25205721-25205969
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTGTGTTTAACATGTCACAGCTC
3' ss Score
5.22
5' ss Seq
GAGGTACAA
5' ss Score
5.13
Exon sequences
Seq C1 exon
GCTCTTTTCCGGACAGTAGCTATGATGGTGCCAGACTATGCTCTGATAGCTGAGATTGTGCTTTACTCCTGTGGATTTGTCAGAGCACGGCCGCTCTCAGTGAAGATTGTGGCTACGTATAGACTGTGCTCTGAGCAGCTCTCTTCCCAGCACCACTATGATTACGGCATGAGGGCTGTCAAATCAGTTCTGACTGCAGCAGGGAACCTGAAG
Seq A exon
CTCAAGTTTCCAGAGGAGAATGAAGATGTTCTGTTGCTGAGATCTATTATTGATGTCAACCTTCCCAAATTTCTGGCTCATGACCTTCCATTATTTGAG
Seq C2 exon
GGCATCACTTCCGATCTGTTCCCAGGAATCAAGCTTCCGAAACCAGATTACAGCGTGCTGCTTGAGGCTATAAGGGAAAATAGCGCTAAGATGAACCTGCAGGTCACTGACTTCTTTGCTGAGAAGATCCTGCAGATCTATGAAATGATGATTGTGCGTCATGGCTTCATGCTGGTGGGAGAGCCTTTCGGTGGGAAGACGTCTGCTTACCGTGTGCTCGCTGCAGCCCTGAATGACATCTGTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060165-'27-28,'27-27,28-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(30.3=100)
A:
PF127742=AAA_6=PD(1.3=9.1)
C2:
PF077289=AAA_5=PU(19.4=33.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTCTTCCCAGCACCACTA
R:
CTGCAGGTTCATCTTAGCGCT
Band lengths:
178-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]