HsaEX6018822 @ hg19
Exon Skipping
Gene
ENSG00000123983 | ACSL3
Description
acyl-CoA synthetase long-chain family member 3 [Source:HGNC Symbol;Acc:3570]
Coordinates
chr2:223765392-223781214:+
Coord C1 exon
chr2:223765392-223765498
Coord A exon
chr2:223773451-223773868
Coord C2 exon
chr2:223781037-223781214
Length
418 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTCTTCCTCCTAGATT
3' ss Score
11.09
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATACAGAATTCGTTGTTGGGAAGGACTGGGGAAACAGCTGTAACATTTGCCACCCTCAGAAGCTGCTGGTCCTGTGTCACACCACCTTAGCCTCTTGATCGAGGAAG
Seq A exon
ATTCTCGCTGAAGTCTGTTAATTCTACTTTTTGAGTACTTATGAATAACCACGTGTCTTCAAAACCATCTACCATGAAGCTAAAACATACCATCAACCCTATTCTTTTATATTTTATACATTTTCTAATATCACTTTATACTATTTTAACATACATTCCGTTTTATTTTTTCTCCGAGTCAAGACAAGAAAAATCAAACCGAATTAAAGCAAAGCCTGTAAATTCAAAACCTGATTCTGCATACAGATCTGTTAATAGTTTGGATGGTTTGGCTTCAGTATTATACCCTGGATGTGATACTTTAGATAAAGTTTTTACATATGCAAAAAACAAATTTAAGAACAAAAGACTCTTGGGAACACGTGAAGTTTTAAATGAGGAAGATGAAGTACAACCAAATGGAAAAATTTTTAAAAAG
Seq C2 exon
GTTATTCTTGGACAGTATAATTGGCTTTCCTATGAAGATGTCTTTGTTCGAGCCTTTAATTTTGGAAATGGATTACAGATGTTGGGTCAGAAACCAAAGACCAACATCGCCATCTTCTGTGAGACCAGGGCCGAGTGGATGATAGCTGCACAGGCGTGTTTTATGTATAATTTTCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123983-'6-9,'6-7,8-9=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.079 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0050123=AMP-binding=PU(2.9=11.1)
C2:
PF0050123=AMP-binding=PU(23.4=97.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCGTTGTTGGGAAGGACTGG
R:
GCTGAAAATTATACATAAAACACGCC
Band lengths:
278-696
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)