MmuEX0003577 @ mm10
Exon Skipping
Gene
ENSMUSG00000032883 | Acsl3
Description
acyl-CoA synthetase long-chain family member 3 [Source:MGI Symbol;Acc:MGI:1921455]
Coordinates
chr1:78663141-78688414:+
Coord C1 exon
chr1:78663141-78663280
Coord A exon
chr1:78681593-78682010
Coord C2 exon
chr1:78688237-78688414
Length
418 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTCTTCCTTCTAGATT
3' ss Score
12.3
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GGTCTTACTGTTTACTCCTTGAACTTGCTGTGAGGCTCAGGTTGGCCTTGAACTTGAGATCCATCTGTCTTAGCCTCCTGAGTGGCATATCACCAACTTTGGGTTGCTGAGTGGATTGCCATCCGTGTATATAACACTTG
Seq A exon
ATTCTCATTGAAATCTGTTAATTCTATTTTTTGAACACTTATGAATAACCACGTATCTTCAACACCATCAACCATGAAGCTAAAACAAACCATCAACCCCATACTTTTATATTTCATACATTTTATAATATCACTCTATACTATTTTAACATACATCCCATTTTATTTTTTGTGTGAGTCAAAACAAGAGAAACCAAACCAAATTAAAGCAAAACCTGTCAGTTCCAAACCGGACTCTGCATACAGATCTATCAACAGTGTGGATGGCTTGGCTTCAGTGCTGTATCCTGGCTGCGATACACTTGATAAAGTCTTTATGTATGCAAAAAACAAATTTAAAAACAAAAGACTATTGGGAACACGTGAAATTTTAAATGAGGAAGATGAAATACAGCCAAATGGAAAAATTTTTAAAAAG
Seq C2 exon
GTTATTCTGGGGCACTATAATTGGCTTTCCTATGAAGATGTCTTCATCCGAGCCCTTGACTTTGGAAATGGGTTACAAATGTTGGGCCAGAAACCAAAGGCCAACATCGCCATCTTCTGTGAGACCAGGGCTGAGTGGATGATCGCTGCACAGGCGTGTTTTATGTATAACTTCCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032883-'2-13,'2-11,19-13
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.062 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0050123=AMP-binding=PU(2.7=10.3)
C2:
PF0050123=AMP-binding=FE(12.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTTACTGTTTACTCCTTGAACT
R:
GCTGGAAGTTATACATAAAACACGCC
Band lengths:
318-736
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types