BtaEX0002231 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017258 | ACSL3
Description
acyl-CoA synthetase long-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:3570]
Coordinates
chr2:111797170-111866617:+
Coord C1 exon
chr2:111797170-111797423
Coord A exon
chr2:111856302-111856715
Coord C2 exon
chr2:111866440-111866617
Length
414 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTCTTTTCCTTCTAGATT
3' ss Score
12.04
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CGGGGGTGCGCGTCCCGGGCGGTTCGGCTCAACAGACGCTGGTCTGCCGGCGCCGGGGTGCGAGTCCGCGCTTGTTGCCGCGGCCGGGTCTGGGACGAGGCGGTGGCGGCGGACCGAATAGCAGACGGCCGTCTCCTCGCAGTGCGACCGCGGCGGCAGCGTCAGGGTCCCCAGGAGGCGGCCCAGGGCGCCAGTGCTCTGGGGGCGCAACCCAGGCCTGCGTGGGTCTGAGGAACCGGGGCCCCGGCGTCGCG
Seq A exon
ATTCTTACAGAAAGCTGTTAATTCTTTTTGAACACTATGAATAACCACGGGTCTTCAAAACCGTCTTCCATGAAGCTGAAACACACCATCAACCCCATTCTTTTGTATTTCATACAGTTCATAATATCACTTTATACTATTTTAACATACATTCCATATTATTTTTTGTCTGAGTCAAGACAAGAAAAATCAAACCGAACTAAAGCAAAGCCTGTAAATTCAAAACCTGACTCTGCATACAGATCTGTTAACAGCTTGGATGGTTTGGCCTCCGTATTATACCCTGGATGTGATACACTTGATAAAGTTTTTATGCATGCAAAAAACAAATTCAAGGACAAAAGACTCTTGGGAACACGTGAAATACTAAATGAGGAAGATGAAGTGCAACCGAATGGAAAAGTTTTTAAAAAG
Seq C2 exon
GTTATTCTTGGAAGCTATAATTGGCTTTCCTACGAAGATGTCTTTGTGAGAGCCTTTAATTTTGGAAACGGCTTACAGATGCTGGGTCAGAAGCCCAAGACCAACATCGCCATCTTCTGTGAGACCAGGGCAGAGTGGATGGTTGCTGCACAGGCCTGCTTCATGTATAATTTTCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017258-'0-7,'0-6,10-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.159 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0050123=AMP-binding=PU(2.9=11.1)
C2:
PF0050123=AMP-binding=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCAACAGACGCTGGTC
R:
TGGTCTCACAGAAGATGGCGA
Band lengths:
356-770
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development