DreEX6029057 @ danRer10
Exon Skipping
Gene
ENSDARG00000014674 | acsl3b
Description
acyl-CoA synthetase long-chain family member 3b [Source:ZFIN;Acc:ZDB-GENE-030131-492]
Coordinates
chr2:47637174-47642580:+
Coord C1 exon
chr2:47637174-47637324
Coord A exon
chr2:47640920-47641120
Coord C2 exon
chr2:47642403-47642580
Length
201 bp
Sequences
Splice sites
3' ss Seq
CTGATTTTCTGTCTCATCAGATA
3' ss Score
8.97
5' ss Seq
AAGGTGACA
5' ss Score
5.19
Exon sequences
Seq C1 exon
GATGAAGCTGAAGGAGGACATGTCTCCTCTCCTGCTGCAGGTCTTCAGATCGGTCGTCTGGGTTTATTCCGTCATCACATTTCTCCCCTGGTACTTGCTCTCTGGAGCCAGCGGAAATCAGGCCCGAGCTAAACGGGTCAAAGCACGCGCA
Seq A exon
ATAAATGGGAATCCAGCAGGGCCGTACCGAGCCGTGAACAGCCAGCTGAAGTTGGCGTCCCTCCTACACGAGGGTGTGGACACTTTGGATAAAGTGTTTGAATATGCTGTTGTCCACTTTCCCGAACGAGACTGCCTCGGCACTAGAGAGCTGCTGAGCGAGGAGGATGAGATCCAGCCTAACGGGAAAGTCTTTAAAAAG
Seq C2 exon
GTGATTTTGGGCGATTATAACTGGTTGTCGTATCAAGACACTTTCCATCTGGCTCAGAGGTTTGGAAGTGGACTGGCTGCGCTGGGTCAGAAGCCTCTCTGCAACATCGCTATTTTTTGCGAGACTCGAGCTGAATGGGTCATAGCGGCACAGGCTTGCTTCATGTACAATTTCCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014674-'7-8,'7-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0050123=AMP-binding=PU(2.7=19.4)
C2:
PF0050123=AMP-binding=FE(12.4=100)
Main Skipping Isoform:
ENSDART00000141974fB961
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACATGTCTCCTCTCCTGCT
R:
TACATGAAGCAAGCCTGTGCC
Band lengths:
303-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]