MmuEX0003577 @ mm9
Exon Skipping
Gene
ENSMUSG00000032883 | Acsl3
Description
acyl-CoA synthetase long-chain family member 3 [Source:MGI Symbol;Acc:MGI:1921455]
Coordinates
chr1:78654400-78684989:+
Coord C1 exon
chr1:78654400-78654678
Coord A exon
chr1:78678168-78678585
Coord C2 exon
chr1:78684812-78684989
Length
418 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTCTTCCTTCTAGATT
3' ss Score
12.3
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
CTCTTTGCATATGCAACGAGCGCCAGCCCGGGGTGCGCGTCCAGGACTGCGGCTCAACAGACGCTGCTCAGCCGGCGCCCGGGAAACGTCGCTGCGGTTGTGGCCGCGGTCGCGGGCTCGGACGAGGAGGCGGCGGCAGAGCGGGAGGCTGAGCCGGCAGCAGGCGGTCGTCCCCGTCTCGCAGGGCGGCCCCAGCAGCTGCGTCAGGGTCCTGAGGAGGTGGCGCTGGGCAGGAGCCGCTCTGAGGAGCAGCCAGGCCTGCGTGGGTCGGAGCCCGCG
Seq A exon
ATTCTCATTGAAATCTGTTAATTCTATTTTTTGAACACTTATGAATAACCACGTATCTTCAACACCATCAACCATGAAGCTAAAACAAACCATCAACCCCATACTTTTATATTTCATACATTTTATAATATCACTCTATACTATTTTAACATACATCCCATTTTATTTTTTGTGTGAGTCAAAACAAGAGAAACCAAACCAAATTAAAGCAAAACCTGTCAGTTCCAAACCGGACTCTGCATACAGATCTATCAACAGTGTGGATGGCTTGGCTTCAGTGCTGTATCCTGGCTGCGATACACTTGATAAAGTCTTTATGTATGCAAAAAACAAATTTAAAAACAAAAGACTATTGGGAACACGTGAAATTTTAAATGAGGAAGATGAAATACAGCCAAATGGAAAAATTTTTAAAAAG
Seq C2 exon
GTTATTCTGGGGCACTATAATTGGCTTTCCTATGAAGATGTCTTCATCCGAGCCCTTGACTTTGGAAATGGGTTACAAATGTTGGGCCAGAAACCAAAGGCCAACATCGCCATCTTCTGTGAGACCAGGGCTGAGTGGATGATCGCTGCACAGGCGTGTTTTATGTATAACTTCCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032883-'0-8,'0-6,7-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.061 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0050123=AMP-binding=PU(2.7=10.3)
C2:
PF0050123=AMP-binding=FE(12.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAACAGACGCTGCTCAG
R:
TGGTCTCACAGAAGATGGCGA
Band lengths:
355-773
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: