HsaEX6023317 @ hg19
Exon Skipping
Gene
ENSG00000006025 | OSBPL7
Description
oxysterol binding protein-like 7 [Source:HGNC Symbol;Acc:16387]
Coordinates
chr17:45894146-45895752:-
Coord C1 exon
chr17:45895635-45895752
Coord A exon
chr17:45894622-45894725
Coord C2 exon
chr17:45894146-45894238
Length
104 bp
Sequences
Splice sites
3' ss Seq
CTTGTTCTTTTTCCCCGCAGAGC
3' ss Score
13.24
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTTCCTGGTGCCCAGCTTCCAACAGCAGCTACTGCCTCAGCCCTACCTGGGCTTGGACCGCGGGAGAAAGTGTCTTCCTGGCTGAGGGACAGTGATGGGCTGGACCGCTGCTCTCATG
Seq A exon
AGCTCTCTGAGTGTCAGGGGAAGCTCCAGGAACTACACAGGCTCCTCCAGAGCCTGGAGTCCCTGCACCGAATCCCCTCAGCCCCTGTTATCCCCACACACCAG
Seq C2 exon
GCCTCAGTGACAACCGAAAGACCCAAGAAGGGGAAACGGACAAGCCGCATGTGGTGCACCCAGAGCTTTGCCAAGGATGACACCATTGGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006025-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.550 A=0.229 C2=0.645
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGCCCAGCTTCCAAC
R:
CCAATGGTGTCATCCTTGGCA
Band lengths:
203-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)