MmuEX6089173 @ mm9
Exon Skipping
Gene
ENSMUSG00000038534 | Osbpl7
Description
oxysterol binding protein-like 7 [Source:MGI Symbol;Acc:MGI:1918490]
Coordinates
chr11:96916073-96917261:+
Coord C1 exon
chr11:96916073-96916190
Coord A exon
chr11:96916841-96916944
Coord C2 exon
chr11:96917169-96917261
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCCCCCAACCCCCAGCAC
3' ss Score
7.88
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GCTCCTGGTACCCAGATGCTAACAGCAGGCAGTGCTTCCGCCTTACCTGGGGTTGGACCTCGAGAGAAAGTGTCATCCTGGCTGAGGGACAGTGACGGGCTAGACCGATGTTCTCATG
Seq A exon
CACTCTCAGAATGCCAGGGTAAGCTGCAGGAACTACACAGACTCCTTCAGAGCCTGGAGTCCCTACACCGCATCCCCTCTGCCCCCGTGATCCCTACACACCAG
Seq C2 exon
ACCTCAGTGACGACCGAGAGACCCAAGAAAGGAAAACGAACCAGTCGCATGTGGTGCACACAGGGCTTCGCCAAGGATGACACCATCGGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038534-'9-12,'9-10,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.456 A=0.262 C2=0.645
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTACCCAGATGCTAACAGC
R:
CGTCCGATGGTGTCATCCTTG
Band lengths:
205-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: