RnoEX6049376 @ rn6
Exon Skipping
Gene
ENSRNOG00000009473 | Osbpl7
Description
oxysterol binding protein-like 7 [Source:RGD Symbol;Acc:1309141]
Coordinates
chr10:84989923-84991107:+
Coord C1 exon
chr10:84989923-84990040
Coord A exon
chr10:84990681-84990784
Coord C2 exon
chr10:84991015-84991107
Length
104 bp
Sequences
Splice sites
3' ss Seq
TCTTCTTCCTTCTCCCCCAGCGC
3' ss Score
11.24
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GCTCCTGGCACCCAGACGCTAACAGCAGGCAGTGCCTCAGCCTTACCTGGGGTTGGACCTCGAGAGAAAGTGTCATCCTGGCTGAGGGACAGTGATGGGCTAGACCGATGTTCTCATG
Seq A exon
CGCTGTCAGAATGCCAGGGTAAGCTGCAGGAACTACACAGACTCCTTCAGAGCCTGGAGTCCCTACACAGAATCCCCTCCGCCCCTGTGATCCCCACACACCAG
Seq C2 exon
GCCTCAGTGACGACCGAGAGACCCAAGAAGGGGAAACGGACCAGCCGCATGTGGTGCACACAGGGCTTTGCCAAGGATGACACCATTGGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009473-'7-15,'7-11,8-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.525 A=0.200 C2=0.645
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCAGACGCTAACAGCAG
R:
CCGTCCAATGGTGTCATCCTT
Band lengths:
203-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]