BtaEX6088118 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013523 | OSBPL7
Description
oxysterol binding protein-like 7 [Source:HGNC Symbol;Acc:HGNC:16387]
Coordinates
chr19:39256531-39257810:+
Coord C1 exon
chr19:39256531-39256648
Coord A exon
chr19:39257286-39257389
Coord C2 exon
chr19:39257718-39257810
Length
104 bp
Sequences
Splice sites
3' ss Seq
CTCATCCATCCTTCCCACAGAAC
3' ss Score
10.97
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTTACCGGTGCCCAGCCTGCGGTATCGGGTAGTGCCTCGGCTCTGCCAGGGGTTGGACCTCGGGAGAAGGTGTCTTCCTGGCTGAGGGACAGTGATGGGCTGGACCGCTGCTCTCACG
Seq A exon
AACTCTCGGAGTGTCAGGGCAAGCTCCAGGAACTACACAGACTCCTCCAGAGCCTGGAGTCCCTGCACCGGATTCCCTCGGCCCCTGTCATCCCCACGCACCAG
Seq C2 exon
GCCTCGGTGACGACGGAGAGACCCAAGAAGGGGAAGCGGACCAGCCGCATGTGGTGCACACAGAGCTTTGCCAAGGACGACACCATCGGGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013523-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.325 A=0.229 C2=0.645
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACCGGTGCCCAGCCTG
R:
GATGGTGTCGTCCTTGGCAAA
Band lengths:
204-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]