DreEX6069726 @ danRer10
Exon Skipping
Gene
ENSDARG00000012981 | osbpl7
Description
oxysterol binding protein-like 7 [Source:ZFIN;Acc:ZDB-GENE-041010-212]
Coordinates
chr12:28673559-28675873:-
Coord C1 exon
chr12:28675765-28675873
Coord A exon
chr12:28675549-28675667
Coord C2 exon
chr12:28673559-28673645
Length
119 bp
Sequences
Splice sites
3' ss Seq
CACTTTGGGCTGTTTTCCAGAGC
3' ss Score
6.8
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GGCACATCTGGGTCTTCTATGGGTGAAAATCTTCAATATGTAAGTCCTGCTGTTAATGGGAAGGTGTCAGCTTGGCTTCAGACCCAAGAACCAGATTTTTGTGGACAAG
Seq A exon
AGCTGACACGTTGTCAGATGGAGCTGAATGAGCTGCAACGGCTGGTTCAAAAGTTGAACTCTCTAGAGTCGGGGCAAACTGTCTATAACGGAGACCTCCAGAGAATGATCAGCATGCAG
Seq C2 exon
AATCTTTCTCTTGACAAACCCAAAAAGAAATCCGCCAAGATTTTTGGTCACTCACGCACACTCTCCCGAGTTGAGGGTCTTGGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012981-'11-8,'11-7,12-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.243 A=0.037 C2=0.339
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACATCTGGGTCTTCTATGGG
R:
CATTCCAAGACCCTCAACTCGG
Band lengths:
195-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]