GgaEX1041431 @ galGal4
Exon Skipping
Gene
ENSGALG00000028934 | OSBPL7
Description
oxysterol binding protein-like 7 [Source:HGNC Symbol;Acc:HGNC:16387]
Coordinates
chr27:3903995-3904482:+
Coord C1 exon
chr27:3903995-3904115
Coord A exon
chr27:3904210-3904313
Coord C2 exon
chr27:3904390-3904482
Length
104 bp
Sequences
Splice sites
3' ss Seq
GCACCTCTGCTCCCACTCAGAGC
3' ss Score
6.24
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGTCCGTGGACACGGATCGTGCCCTCAGGCAGTGCCCCTGCCCTGTCTGCCCTCGCCAGCTCCAGGGACAAGGTGGATGCATGGCTGAAAGACAGCGAGGGACTGGAGCGCTGCTCGGCCG
Seq A exon
AGCTGTCAGCGTGCCAGGCGCAGCTGCGGGAGCTGACGGAGATGCTGCAGAGCCTCGAATCCCTGCACCGCATCCCCTCCGCGCCCCTCATCTCCAGCACTCAG
Seq C2 exon
CCCTCAGCTGCCACGGAGAGGCCCAAGAAGGGTCGGAGGACCACCAGGATGTGGTGCACTCAGAGCTTCGCCAAGGATGACACCATCGGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028934_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.220 A=0.200 C2=0.645
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGATCGTGCCCTCAGG
R:
CGTCCGATGGTGTCATCCTTG
Band lengths:
202-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]