HsaEX6031632 @ hg19
Exon Skipping
Gene
ENSG00000162624 | LHX8
Description
LIM homeobox 8 [Source:HGNC Symbol;Acc:28838]
Coordinates
chr1:75595911-75602946:+
Coord C1 exon
chr1:75595911-75596417
Coord A exon
chr1:75602288-75602374
Coord C2 exon
chr1:75602785-75602946
Length
87 bp
Sequences
Splice sites
3' ss Seq
CTCCCCCTCCTACTCCGCAGTGT
3' ss Score
9.22
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ACGCTTCCCCTATTTCTTCCGTAGCGGACCGGGAGAGCTTACTGGCGCTCTGCGAACCGGCTGGAAAGAAACACCGAGTCACTCGTACAGACTCTTGGTCGCAGAACTTGGCTTTCCGCTATTGGTCCTCCAGAACCGCTTGAAACAACTGGCCCCAGCTGGCGCATCAGACCGCAGTGAGGAATGCCGCGGGGCGGGTGGCGAAGGCAGGGTCTGCCCGCCAGTGGATTCCCGGGTGTCCCGCGTGGAGCAGGCTTGCCCAGCTGGGAAGCCCATCAAACCTCAGTCTTGGCCCACAGTGGGAGAGAGACCAGTGGGTCCCAGACGGAGGCCCTCGCCCGCTTTTGGCGACCTCCACTGGCGTGAATAAAAGCACCCCTCTCTTACCCTCAGAAACTGTGGGTAGCAAGGTATAAAACGGAGTCTGGGACCGGTAAGTCCCAAGGTGAGCCCGTATACAGCTCTGCCATCTCTGAGGGGTTATGCAGATTCTGAGCAGG
Seq A exon
TGTCAGGGGCTCATGTCAGAGGAGTGCGGGCGGACTACAGCCCTGGCGGCCGGGAGGACTCGCAAAGGCGCCGGGGAAGAGGGACTG
Seq C2 exon
GTGAGCCCCGAGGGAGCGGGGGACGAGGACTCGTGCTCCTCCTCGGCCCCGCTGTCCCCGTCGTCCTCGCCCCGGTCCATGGCCTCGGGCTCCGGCTGCCCTCCTGGCAAGTGTGTGTGCAACAGTTGCGGCCTGGAGATCGTGGACAAATACCTTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162624-'1-3,'1-2,3-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.265 C2=0.179
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0041217=LIM=PU(24.1=25.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAGCCCGTATACAGCTCT
R:
AACTGTTGCACACACACTTGC
Band lengths:
183-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)