HsaEX6031632 @ hg38
Exon Skipping
Gene
ENSG00000162624 | LHX8
Description
LIM homeobox 8 [Source:HGNC Symbol;Acc:HGNC:28838]
Coordinates
chr1:75134882-75137261:+
Coord C1 exon
chr1:75134882-75134954
Coord A exon
chr1:75136603-75136689
Coord C2 exon
chr1:75137100-75137261
Length
87 bp
Sequences
Splice sites
3' ss Seq
CTCCCCCTCCTACTCCGCAGTGT
3' ss Score
9.22
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CTCACTTAACCTGAGACATGGAGACTGTAATTTGGGAGATGAAGCCTCGAGCCTAAGGCGCTCTCAGGTCCAT
Seq A exon
TGTCAGGGGCTCATGTCAGAGGAGTGCGGGCGGACTACAGCCCTGGCGGCCGGGAGGACTCGCAAAGGCGCCGGGGAAGAGGGACTG
Seq C2 exon
GTGAGCCCCGAGGGAGCGGGGGACGAGGACTCGTGCTCCTCCTCGGCCCCGCTGTCCCCGTCGTCCTCGCCCCGGTCCATGGCCTCGGGCTCCGGCTGCCCTCCTGGCAAGTGTGTGTGCAACAGTTGCGGCCTGGAGATCGTGGACAAATACCTTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162624-'3-3,'3-2,8-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.167 C2=0.019
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0041217=LIM=PU(24.1=25.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAAGGCGCTCTCAGGTCCAT
R:
ATTTGTCCACGATCTCCAGGC
Band lengths:
172-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains