MmuEX6074843 @ mm10
Exon Skipping
Gene
ENSMUSG00000096225 | Lhx8
Description
LIM homeobox protein 8 [Source:MGI Symbol;Acc:MGI:1096343]
Coordinates
chr3:154328005-154330059:-
Coord C1 exon
chr3:154330021-154330059
Coord A exon
chr3:154328355-154328441
Coord C2 exon
chr3:154328005-154328166
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTCCCGCTCTCGCGGCGCAGTGC
3' ss Score
7.04
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GGAGACGAAACCTGGAGCCTAAGACGCTCACGGGGCAAC
Seq A exon
TGCCCCGGGCTCATGTCGGAGGAGTGCGGGCGGCCTGCAGCCCTGGCGGCCGGGAGGACCCGCAAAGGCGCTGGGGAAGAAGGACTG
Seq C2 exon
GTGAATCCCGAGGGAGCCGGGGACGAGGACTCCTGCTCCTCCTCGGCCCCGCTTTCCCCGTCGTCCTCGCCCCAGTCCATGGCCTCGGGCTCCGTGTGCCCGCCAGGCAAGTGTGTGTGCAGCAGCTGCGGCCTGGAGATTGTGGACAAATACCTCCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000096225-'1-3,'1-2,3-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.150 C2=0.111
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0041217=LIM=PU(24.1=25.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACCTGGAGCCTAAGACGC
R:
TTTGTCCACAATCTCCAGGCC
Band lengths:
183-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types