MmuEX6074843 @ mm9
Exon Skipping
Gene
ENSMUSG00000028201 | Lhx8
Description
LIM homeobox protein 8 [Source:MGI Symbol;Acc:MGI:1096343]
Coordinates
chr3:153990969-153993023:-
Coord C1 exon
chr3:153992985-153993023
Coord A exon
chr3:153991319-153991405
Coord C2 exon
chr3:153990969-153991130
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTCCCGCTCTCGCGGCGCAGTGC
3' ss Score
7.04
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GGAGACGAAACCTGGAGCCTAAGACGCTCACGGGGCAAC
Seq A exon
TGCCCCGGGCTCATGTCGGAGGAGTGCGGGCGGCCTGCAGCCCTGGCGGCCGGGAGGACCCGCAAAGGCGCTGGGGAAGAAGGACTG
Seq C2 exon
GTGAATCCCGAGGGAGCCGGGGACGAGGACTCCTGCTCCTCCTCGGCCCCGCTTTCCCCGTCGTCCTCGCCCCAGTCCATGGCCTCGGGCTCCGTGTGCCCGCCAGGCAAGTGTGTGTGCAGCAGCTGCGGCCTGGAGATTGTGGACAAATACCTCCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028201-'1-4,'1-2,2-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.487 C2=0.145
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0041217=LIM=PU(24.1=25.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACCTGGAGCCTAAGACGC
R:
TTTGTCCACAATCTCCAGGCC
Band lengths:
183-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: