HsaEX6034202 @ hg19
Exon Skipping
Gene
ENSG00000073754 | CD5L
Description
CD5 molecule-like [Source:HGNC Symbol;Acc:1690]
Coordinates
chr1:157800704-157804538:-
Coord C1 exon
chr1:157804197-157804538
Coord A exon
chr1:157802982-157803302
Coord C2 exon
chr1:157800704-157801758
Length
321 bp
Sequences
Splice sites
3' ss Seq
CTTCCTCCCCCATCCTGCAGATC
3' ss Score
12.83
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ACCCAGAGAGCTCTTTCTCCCCAGTCCCAGAGGGTGTCAGGCTGGCTGACGGCCCTGGGCATTGCAAGGGACGCGTGGAAGTGAAGCACCAGAACCAGTGGTATACCGTGTGCCAGACAGGCTGGAGCCTCCGGGCCGCAAAGGTGGTGTGCCGGCAGCTGGGATGTGGGAGGGCTGTACTGACTCAAAAACGCTGCAACAAGCATGCCTATGGCCGAAAACCCATCTGGCTGAGCCAGATGTCATGCTCAGGACGAGAAGCAACCCTTCAGGATTGCCCTTCTGGGCCTTGGGGGAAGAACACCTGCAACCATGATGAAGACACGTGGGTCGAATGTGAAG
Seq A exon
ATCCCTTTGACTTGAGACTAGTAGGAGGAGACAACCTCTGCTCTGGGCGACTGGAGGTGCTGCACAAGGGCGTATGGGGCTCTGTCTGTGATGACAACTGGGGAGAAAAGGAGGACCAGGTGGTATGCAAGCAACTGGGCTGTGGGAAGTCCCTCTCTCCCTCCTTCAGAGACCGGAAATGCTATGGCCCTGGGGTTGGCCGCATCTGGCTGGATAATGTTCGTTGCTCAGGGGAGGAGCAGTCCCTGGAGCAGTGCCAGCACAGATTTTGGGGGTTTCACGACTGCACCCACCAGGAAGATGTGGCTGTCATCTGCTCAG
Seq C2 exon
GATAGTATCCTGGTGTTGCTTGACCTGGCCCCCCTGGCCCCGCCTGCCCTCTGCTTGTTCTCCTGAGCCCTGATTATCCTCATACTCATTCTGGGGCTCAGGCTTGAGCCACTACTCCCTCATCCCCTCAGGAGTCTGAACACTGGGCTTATGCCTTACTCTCAGGGACAAGCAGCCCCCATTGCTGCCTGTAGATGTGAGCTGTTGAGTTCCCTCTTGCTGGGGAAGATGAGCTTCCATGTATCCTGTGCTCAACCCTGACCCTTTGACACTGGTTCTGGCCTTTCCTGCCTTTTCTCAAGCTGCCTGGAATCCTCAAACCTGTCACTTTGGTCAGATGTGCAGACCATTACTAAGGTCTATGTCTGCAAACATTACTAATCTAGGTCCTATTACTAATCTATGTCTGCAAACATTAAAGGAATGAAACAATGAAAGGAACATTTGAAAGAAAATGTGGGTAGACAATTTCTTGCAACTTGGGGGAAAGTTTAGAATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000073754-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=86.1)
A:
PF0053013=SRCR=WD(100=92.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGATGTCATGCTCAGGAC
R:
AGCTCATCTTCCCCAGCAAGA
Band lengths:
343-664
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)